IL_9F9S_218
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAUAA(OMU)G*C(OMU)AU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_218 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.0674
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|M1|A|1883
9F9S|1|M1|A|1884
9F9S|1|M1|U|1885
9F9S|1|M1|A|1886
9F9S|1|M1|A|1887
9F9S|1|M1|OMU|1888
9F9S|1|M1|G|1889
*
9F9S|1|M1|C|2346
9F9S|1|M1|OMU|2347
9F9S|1|M1|A|2348
9F9S|1|M1|U|2349
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MK
- 60S ribosomal protein L17-A
- Chain Mn
- 60S ribosomal protein L31-A
- Chain Mx
- 60S ribosomal protein L3
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