IL_9F9S_246
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_246 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.0954
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9F9S|1|M1|U|2718
9F9S|1|M1|U|2719
9F9S|1|M1|G|2720
9F9S|1|M1|A|2721
*
9F9S|1|M1|U|2735
9F9S|1|M1|A|2736
9F9S|1|M1|C|2737
9F9S|1|M1|A|2738
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain ML
- 60S ribosomal protein L18-A
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mc
- 60S ribosomal protein L42-A
- Chain Mp
- 60S ribosomal protein L29
- Chain Mz
- 60S ribosomal protein L5
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