IL_9F9S_256
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_256 not in the Motif Atlas
- Geometric match to IL_5TBW_475
- Geometric discrepancy: 0.0715
- The information below is about IL_5TBW_475
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|C|2889
9F9S|1|M1|A|2890
9F9S|1|M1|U|2891
9F9S|1|M1|A|2892
*
9F9S|1|M1|U|2909
9F9S|1|M1|A|2910
9F9S|1|M1|A|2911
9F9S|1|M1|G|2912
9F9S|1|M1|C|2913
9F9S|1|M1|G|2914
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MD
- 60S ribosomal protein L9-A
- Chain MJ
- 60S ribosomal protein L16-A
- Chain Ma
- 60S ribosomal protein L23-A
- Chain Me
- Ubiquitin-60S ribosomal protein L40
- Chain Mx
- 60S ribosomal protein L3
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