IL_9F9S_347
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9F9S|1|R1|C|1158, 9F9S|1|R1|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_347 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.122
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
9F9S|1|R1|A|1157
9F9S|1|R1|C|1158
9F9S|1|R1|C|1159
9F9S|1|R1|A|1160
*
9F9S|1|R1|U|1617
9F9S|1|R1|C|1618
9F9S|1|R1|C|1619
9F9S|1|R1|C|1620
9F9S|1|R1|U|1621
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain DQ
- Transfer RNA; tRNA
- Chain RC
- 40S ribosomal protein S28-A
- Chain Rf
- 40S ribosomal protein S5
- Chain Rq
- 40S ribosomal protein S16-A
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