IL_9F9S_350

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_350 not in the Motif Atlas

Homologous match to IL_8C3A_452

Geometric discrepancy: 0.0912

The information below is about IL_8C3A_452

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9F9S|1|R1|G|1213
9F9S|1|R1|U|1214
9F9S|1|R1|C|1215
*
9F9S|1|R1|G|1448
9F9S|1|R1|U|1449
9F9S|1|R1|U|1450

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain RD

Small ribosomal subunit protein uS14A

Chain RF

Ubiquitin

Chain Rk

40S ribosomal protein S10-A

Chain Rp

40S ribosomal protein S15