IL_9F9S_397

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9F9S|1|S1|U|313, 9F9S|1|S1|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_397 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.0828

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9F9S|1|S1|U|311
9F9S|1|S1|A|312
9F9S|1|S1|U|313
9F9S|1|S1|C|314
9F9S|1|S1|A|315
9F9S|1|S1|A|316
*
9F9S|1|S1|U|348
9F9S|1|S1|U|349
9F9S|1|S1|U|350
9F9S|1|S1|C|351
9F9S|1|S1|A|352
9F9S|1|S1|A|353
9F9S|1|S1|C|354
9F9S|1|S1|G|355

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Si

40S ribosomal protein S8-A

Chain Sl

40S ribosomal protein S11-A

Chain Sx

40S ribosomal protein S23-A