IL_9F9S_424
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_424 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.0553
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
9F9S|1|S1|G|885
9F9S|1|S1|U|886
9F9S|1|S1|A|887
9F9S|1|S1|U|888
*
9F9S|1|S1|A|924
9F9S|1|S1|G|925
9F9S|1|S1|A|926
9F9S|1|S1|C|927
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Lw
- 60S ribosomal protein L2-A
- Chain SA
- Small ribosomal subunit protein eS26A
- Chain Sb
- 40S ribosomal protein S1-A
- Chain So
- 40S ribosomal protein S14-A
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