IL_9F9S_431

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_431 not in the Motif Atlas

Homologous match to IL_8C3A_446

Geometric discrepancy: 0.0653

The information below is about IL_8C3A_446

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9F9S|1|S1|G|1111
9F9S|1|S1|G|1112
9F9S|1|S1|A|1113
9F9S|1|S1|G|1114
9F9S|1|S1|U|1115
9F9S|1|S1|A|1116
9F9S|1|S1|U|1117
9F9S|1|S1|G|1118
*
9F9S|1|S1|U|1129
9F9S|1|S1|G|1130
9F9S|1|S1|A|1131
9F9S|1|S1|A|1132
9F9S|1|S1|A|1133
9F9S|1|S1|C|1134

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Ld

60S ribosomal protein L41-A

Chain Sx

40S ribosomal protein S23-A