IL_9F9S_473

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9F9S|1|L1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_473 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5717

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9F9S|1|L1|G|1234
9F9S|1|L1|U|1235
9F9S|1|L1|G|1236
9F9S|1|L1|G|1237
9F9S|1|L1|C|1238
*
9F9S|1|L1|G|1250
9F9S|1|L1|A|1251
9F9S|1|L1|A|1252
9F9S|1|L1|U|1253
9F9S|1|L1|C|1254

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains