IL_9G06_054

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_054 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0829

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9G06|1|B|C|1303
9G06|1|B|G|1304
9G06|1|B|G|1305
9G06|1|B|A|1306
9G06|1|B|U|1307
9G06|1|B|U|1308
*
9G06|1|B|A|1329
9G06|1|B|U|1330
9G06|1|B|G|1331
9G06|1|B|A|1332
9G06|1|B|A|1333
9G06|1|B|G|1334

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13