IL_9G06_058

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

9G06|1|B|A|1492, 9G06|1|B|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G06_058 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2042

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9G06|1|B|5MC|1407
9G06|1|B|A|1408
9G06|1|B|C|1409
*
9G06|1|B|G|1491
9G06|1|B|A|1492
9G06|1|B|A|1493
9G06|1|B|G|1494

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain I

Translation initiation factor IF-1

Chain J

Translation initiation factor IF-3

Chain L

Small ribosomal subunit protein uS12