IL_9G6J_123

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUUU*AACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G6J_123 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.1981

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9G6J|1|1|U|3138
9G6J|1|1|U|3139
9G6J|1|1|U|3140
9G6J|1|1|U|3141
*
9G6J|1|1|A|3244
9G6J|1|1|A|3245
9G6J|1|1|C|3246
9G6J|1|1|A|3247

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AG

Ribosomal 60S subunit protein L33A

Chain w

Ribosomal 60S subunit protein L16A