IL_9G7C_002

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

CGGGUC*GCCG

Length

10 nucleotides

Bulged bases

9G7C|1|A|G|10, 9G7C|1|A|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G7C_002 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.2769

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9G7C|1|A|C|7
9G7C|1|A|G|8
9G7C|1|A|G|9
9G7C|1|A|G|10
9G7C|1|A|U|11
9G7C|1|A|C|12
*
9G7C|1|A|G|215
9G7C|1|A|C|216
9G7C|1|A|C|217
9G7C|1|A|G|218

Current chains

Chain A

raiA (224-MER)

Nearby chains