IL_9G8M_009

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AU*ACAUGU

Length

8 nucleotides

Bulged bases

9G8M|1|L5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_009 not in the Motif Atlas

Homologous match to IL_8P9A_236

Geometric discrepancy: 0.1487

The information below is about IL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9G8M|1|L5|A|121
9G8M|1|L5|U|122
*
9G8M|1|L5|A|147
9G8M|1|L5|C|148
9G8M|1|L5|A|149
9G8M|1|L5|U|150
9G8M|1|L5|G|151
9G8M|1|L5|U|152

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15