IL_9G8M_071
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9G8M|1|L5|U|1928, 9G8M|1|L5|C|1929, 9G8M|1|L5|G|2053, 9G8M|1|L5|A|2055
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_071 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.2035
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9G8M|1|L5|C|1924
9G8M|1|L5|U|1925
9G8M|1|L5|C|1926
9G8M|1|L5|A|1927
9G8M|1|L5|U|1928
9G8M|1|L5|C|1929
9G8M|1|L5|A|1930
9G8M|1|L5|G|1931
*
9G8M|1|L5|C|2051
9G8M|1|L5|U|2052
9G8M|1|L5|G|2053
9G8M|1|L5|G|2054
9G8M|1|L5|A|2055
9G8M|1|L5|G|2056
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain LM
- 60S ribosomal protein L14
- Chain LO
- 60S ribosomal protein L13a
- Chain LS
- 60S ribosomal protein L18a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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