IL_9G8M_081

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_081 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.121

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9G8M|1|L5|G|2356
9G8M|1|L5|U|2357
9G8M|1|L5|A|2358
9G8M|1|L5|G|2359
9G8M|1|L5|U|2360
9G8M|1|L5|A|2361
9G8M|1|L5|G|2362
*
9G8M|1|L5|C|3856
9G8M|1|L5|G|3857
9G8M|1|L5|A|3858
9G8M|1|L5|A|3859
9G8M|1|L5|A|3860
9G8M|1|L5|C|3861

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17