IL_9G8M_082

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

9G8M|1|L5|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_082 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.3091

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

9G8M|1|L5|U|2413
9G8M|1|L5|G|2414
9G8M|1|L5|A|2415
9G8M|1|L5|A|2416
9G8M|1|L5|C|2417
*
9G8M|1|L5|G|2425
9G8M|1|L5|A|2426
9G8M|1|L5|A|2427

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39