IL_9G8M_112
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9G8M|1|L5|G|4082, 9G8M|1|L5|G|4084, 9G8M|1|L5|G|4085, 9G8M|1|L5|C|4160, 9G8M|1|L5|U|4161
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_112 not in the Motif Atlas
- Homologous match to IL_8P9A_324
- Geometric discrepancy: 0.4175
- The information below is about IL_8P9A_324
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.1
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9G8M|1|L5|G|4080
9G8M|1|L5|U|4081
9G8M|1|L5|G|4082
9G8M|1|L5|A|4083
9G8M|1|L5|G|4084
9G8M|1|L5|G|4085
9G8M|1|L5|C|4086
*
9G8M|1|L5|G|4159
9G8M|1|L5|C|4160
9G8M|1|L5|U|4161
9G8M|1|L5|C|4162
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
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