IL_9G8M_134
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_134 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1171
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9G8M|1|L5|C|4594
9G8M|1|L5|U|4595
9G8M|1|L5|C|4596
9G8M|1|L5|A|4597
9G8M|1|L5|G|4598
9G8M|1|L5|U|4599
9G8M|1|L5|A|4600
9G8M|1|L5|C|4601
*
9G8M|1|L5|G|4606
9G8M|1|L5|G|4607
9G8M|1|L5|A|4608
9G8M|1|L5|A|4609
9G8M|1|L5|C|4610
9G8M|1|L5|C|4611
9G8M|1|L5|G|4612
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L9
- Chain LV
- 60S ribosomal protein L23
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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