IL_9G8M_136
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUAUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9G8M|1|L5|U|4632, 9G8M|1|L5|U|4634
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_136 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.2749
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9G8M|1|L5|U|4630
9G8M|1|L5|G|4631
9G8M|1|L5|U|4632
9G8M|1|L5|A|4633
9G8M|1|L5|U|4634
9G8M|1|L5|G|4635
*
9G8M|1|L5|C|4660
9G8M|1|L5|G|4661
9G8M|1|L5|A|4662
9G8M|1|L5|A|4663
9G8M|1|L5|G|4664
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LW
- 60S ribosomal protein L24
- Chain Ld
- 60S ribosomal protein L31
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