IL_9G8M_168
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UACGCAC*GUGAAA
- Length
- 13 nucleotides
- Bulged bases
- 9G8M|1|S2|C|65, 9G8M|1|S2|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9G8M_168 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.3574
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.2
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
9G8M|1|S2|U|63
9G8M|1|S2|A|64
9G8M|1|S2|C|65
9G8M|1|S2|G|66
9G8M|1|S2|C|67
9G8M|1|S2|A|68
9G8M|1|S2|C|69
*
9G8M|1|S2|G|80
9G8M|1|S2|U|81
9G8M|1|S2|G|82
9G8M|1|S2|A|83
9G8M|1|S2|A|84
9G8M|1|S2|A|85
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
Coloring options: