IL_9G8M_206

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

9G8M|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9G8M_206 not in the Motif Atlas

Geometric match to IL_7Z4D_016

Geometric discrepancy: 0.397

The information below is about IL_7Z4D_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91129.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9G8M|1|S2|G|1203
9G8M|1|S2|A|1204
9G8M|1|S2|C|1205
*
9G8M|1|S2|G|1693
9G8M|1|S2|U|1694
9G8M|1|S2|A|1695
9G8M|1|S2|C|1696

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26