3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUC*GAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GFT_067 not in the Motif Atlas
Homologous match to IL_5E81_371
Geometric discrepancy: 0.2821
The information below is about IL_5E81_371
Detailed Annotation
Self complementary
Broad Annotation
Self complementary
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

9GFT|1|A3|A|29
9GFT|1|A3|U|30
9GFT|1|A3|C|31
*
9GFT|1|A3|G|41
9GFT|1|A3|A|42
9GFT|1|A3|U|43

Current chains

Chain A3
A-site tRNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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