IL_9GFT_103

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9GFT|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_103 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1708

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9GFT|1|AA|U|684
9GFT|1|AA|G|685
9GFT|1|AA|U|686
9GFT|1|AA|A|687
9GFT|1|AA|G|688
*
9GFT|1|AA|C|699
9GFT|1|AA|G|700
9GFT|1|AA|U|701
9GFT|1|AA|A|702
9GFT|1|AA|G|703
9GFT|1|AA|A|704
9GFT|1|AA|G|705
9GFT|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Large subunit ribosomal RNA; LSU rRNA

Chain y

Small ribosomal subunit protein uS11