IL_9GFT_123

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9GFT|1|AA|A|1257, 9GFT|1|AA|A|1280, 9GFT|1|AA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_123 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1935

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

9GFT|1|AA|G|1255
9GFT|1|AA|A|1256
9GFT|1|AA|A|1257
9GFT|1|AA|G|1258
*
9GFT|1|AA|C|1277
9GFT|1|AA|G|1278
9GFT|1|AA|G|1279
9GFT|1|AA|A|1280
9GFT|1|AA|C|1281
9GFT|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS3

Chain AJ

Small ribosomal subunit protein uS10

Chain AM

Small ribosomal subunit protein uS14