IL_9GFT_172

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9GFT|1|AV|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_172 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.1249

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9GFT|1|AV|G|1031
9GFT|1|AV|A|1032
9GFT|1|AV|U|1033
9GFT|1|AV|G|1034
*
9GFT|1|AV|C|1121
9GFT|1|AV|G|1122
9GFT|1|AV|C|1123

Current chains

Chain AV

23S RNA

Nearby chains

Chain AW

5S ribosomal RNA; 5S rRNA

Chain Ah

50S ribosomal protein L16

Chain Az

Large ribosomal subunit protein bL36A