IL_9GFT_204
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9GFT|1|AV|A|1801, 9GFT|1|AV|C|1816, 9GFT|1|AV|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GFT_204 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.1141
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GFT|1|AV|U|1798
9GFT|1|AV|G|1799
9GFT|1|AV|C|1800
9GFT|1|AV|A|1801
9GFT|1|AV|A|1802
9GFT|1|AV|A|1803
9GFT|1|AV|C|1804
*
9GFT|1|AV|G|1813
9GFT|1|AV|G|1814
9GFT|1|AV|A|1815
9GFT|1|AV|C|1816
9GFT|1|AV|G|1817
9GFT|1|AV|U|1818
9GFT|1|AV|A|1819
9GFT|1|AV|U|1820
9GFT|1|AV|A|1821
Current chains
- Chain AV
- 23S RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AX
- Large ribosomal subunit protein uL2
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