IL_9GFT_322

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9GFT|1|N|A|1801, 9GFT|1|N|C|1816, 9GFT|1|N|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_322 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0882

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9GFT|1|N|U|1798
9GFT|1|N|G|1799
9GFT|1|N|C|1800
9GFT|1|N|A|1801
9GFT|1|N|A|1802
9GFT|1|N|A|1803
9GFT|1|N|C|1804
*
9GFT|1|N|G|1813
9GFT|1|N|G|1814
9GFT|1|N|A|1815
9GFT|1|N|C|1816
9GFT|1|N|G|1817
9GFT|1|N|U|1818
9GFT|1|N|A|1819
9GFT|1|N|U|1820
9GFT|1|N|A|1821

Current chains

Chain N

23S RNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA

Chain P

Large ribosomal subunit protein uL2