IL_9GFT_353

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9GFT|1|N|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GFT_353 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1112

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9GFT|1|N|C|2636
9GFT|1|N|U|2637
9GFT|1|N|G|2638
9GFT|1|N|A|2639
9GFT|1|N|G|2640
*
9GFT|1|N|C|2774
9GFT|1|N|G|2775
9GFT|1|N|A|2776
9GFT|1|N|G|2777
9GFT|1|N|A|2778
9GFT|1|N|U|2779
9GFT|1|N|G|2780
9GFT|1|N|A|2781
9GFT|1|N|G|2782

Current chains

Chain N

23S RNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain W

Large ribosomal subunit protein uL13