3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UAAC*GGGA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHH_174 not in the Motif Atlas
Geometric match to IL_8P9A_327
Geometric discrepancy: 0.1656
The information below is about IL_8P9A_327
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

9GHH|1|a|U|1434
9GHH|1|a|A|1435
9GHH|1|a|A|1436
9GHH|1|a|C|1437
*
9GHH|1|a|G|1484
9GHH|1|a|G|1485
9GHH|1|a|G|1486
9GHH|1|a|A|1487

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain N
50S ribosomal protein L14
Chain m
30S ribosomal protein S12

Coloring options:


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