IL_9GHH_174

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_174 not in the Motif Atlas

Geometric match to IL_8P9A_327

Geometric discrepancy: 0.1656

The information below is about IL_8P9A_327

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9GHH|1|a|U|1434
9GHH|1|a|A|1435
9GHH|1|a|A|1436
9GHH|1|a|C|1437
*
9GHH|1|a|G|1484
9GHH|1|a|G|1485
9GHH|1|a|G|1486
9GHH|1|a|A|1487

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain N

50S ribosomal protein L14

Chain m

30S ribosomal protein S12