3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
CGCCCGAU*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GMO_068 not in the Motif Atlas
Homologous match to IL_8C3A_052
Geometric discrepancy: 0.1778
The information below is about IL_8C3A_052
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_84902.1
Basepair signature
cWW-L-cWW-L-L-R-cHH
Number of instances in this motif group
2

Unit IDs

9GMO|1|A|C|1911
9GMO|1|A|G|1912
9GMO|1|A|C|1913
9GMO|1|A|C|1914
9GMO|1|A|C|1915
9GMO|1|A|G|1916
9GMO|1|A|A|1917
9GMO|1|A|U|1918
*
9GMO|1|A|G|2064
9GMO|1|A|G|2065

Current chains

Chain A
28S rRNA

Nearby chains

Chain I
60S ribosomal protein L13a
Chain M
60S ribosomal protein L18a
Chain Z
60S ribosomal protein L35a
Chain m
Large ribosomal subunit protein uL30

Coloring options:


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