IL_9GMO_092

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_092 not in the Motif Atlas

Homologous match to IL_8P9A_302

Geometric discrepancy: 0.1167

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9GMO|1|A|A|2832
9GMO|1|A|A|2833
9GMO|1|A|C|2834
9GMO|1|A|A|2835
9GMO|1|A|A|2836
9GMO|1|A|OMU|2837
9GMO|1|A|G|2838
*
9GMO|1|A|C|3850
9GMO|1|A|PSU|3851
9GMO|1|A|A|3852
9GMO|1|A|PSU|3853

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain J

60S ribosomal protein L17

Chain X

60S ribosomal protein L31