IL_9GMO_111

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9GMO|1|A|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_111 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.1647

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

9GMO|1|A|G|3916
9GMO|1|A|A|3917
*
9GMO|1|A|U|4384
9GMO|1|A|A|4385
9GMO|1|A|C|4386
9GMO|1|A|C|4387

Current chains

Chain A

28S rRNA

Nearby chains

Chain 0

Cytoplasmic 60S subunit biogenesis factor ZNF622

Chain D

60S ribosomal protein L8