IL_9GMO_154
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_154 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.1365
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9GMO|1|B|G|21
9GMO|1|B|A|22
9GMO|1|B|A|23
9GMO|1|B|C|24
9GMO|1|B|G|25
9GMO|1|B|C|26
9GMO|1|B|G|27
*
9GMO|1|B|C|52
9GMO|1|B|U|53
9GMO|1|B|A|54
9GMO|1|B|A|55
9GMO|1|B|G|56
9GMO|1|B|C|57
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L5
- Chain q
- 60S ribosomal protein L11
Coloring options: