3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
GUUAGUAC*GGAAUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GMO_157 not in the Motif Atlas
Homologous match to IL_8C3A_148
Geometric discrepancy: 0.2707
The information below is about IL_8C3A_148
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.9
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9GMO|1|B|G|71
9GMO|1|B|U|72
9GMO|1|B|U|73
9GMO|1|B|A|74
9GMO|1|B|G|75
9GMO|1|B|U|76
9GMO|1|B|A|77
9GMO|1|B|C|78
*
9GMO|1|B|G|98
9GMO|1|B|G|99
9GMO|1|B|A|100
9GMO|1|B|A|101
9GMO|1|B|U|102
9GMO|1|B|A|103
9GMO|1|B|C|104

Current chains

Chain B
5S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain G
60S ribosomal protein L5
Chain M
60S ribosomal protein L18a
Chain N
60S ribosomal protein L21
Chain m
Large ribosomal subunit protein uL30
Chain p
Large ribosomal subunit protein uL16

Coloring options:


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