IL_9GMO_157
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_157 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.2707
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
9GMO|1|B|G|71
9GMO|1|B|U|72
9GMO|1|B|U|73
9GMO|1|B|A|74
9GMO|1|B|G|75
9GMO|1|B|U|76
9GMO|1|B|A|77
9GMO|1|B|C|78
*
9GMO|1|B|G|98
9GMO|1|B|G|99
9GMO|1|B|A|100
9GMO|1|B|A|101
9GMO|1|B|U|102
9GMO|1|B|A|103
9GMO|1|B|C|104
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L18a
- Chain N
- 60S ribosomal protein L21
- Chain m
- Large ribosomal subunit protein uL30
- Chain p
- Large ribosomal subunit protein uL16
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