IL_9GMO_161
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- AUUAGA*UA(PSU)(PSU)CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_161 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.398
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GMO|1|A|A|1746
9GMO|1|A|U|1747
9GMO|1|A|U|1748
9GMO|1|A|A|1749
9GMO|1|A|G|1750
9GMO|1|A|A|1751
*
9GMO|1|A|U|1779
9GMO|1|A|A|1780
9GMO|1|A|PSU|1781
9GMO|1|A|PSU|1782
9GMO|1|A|C|1783
9GMO|1|A|U|1784
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 60S ribosomal protein L5
- Chain p
- Large ribosomal subunit protein uL16
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