IL_9H3Q_018

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

9H3Q|1|A|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Q_018 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.3766

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

9H3Q|1|A|U|702
9H3Q|1|A|U|703
9H3Q|1|A|G|704
9H3Q|1|A|A|705
9H3Q|1|A|A|706
9H3Q|1|A|G|707
*
9H3Q|1|A|U|724
9H3Q|1|A|G|725
9H3Q|1|A|G|726
9H3Q|1|A|A|727
9H3Q|1|A|G|728
9H3Q|1|A|G|729
9H3Q|1|A|A|730

Current chains

Chain A

23S ribosomal RNA

Nearby chains