IL_9H3Q_083

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9H3Q|1|A|U|2689, 9H3Q|1|A|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3Q_083 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1941

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9H3Q|1|A|U|2687
9H3Q|1|A|G|2688
9H3Q|1|A|U|2689
9H3Q|1|A|U|2690
9H3Q|1|A|C|2691
*
9H3Q|1|A|G|2718
9H3Q|1|A|G|2719
9H3Q|1|A|U|2720
9H3Q|1|A|A|2721
9H3Q|1|A|G|2722

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17