IL_9H51_044

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

9H51|1|A|G|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H51_044 not in the Motif Atlas

Geometric match to IL_9DFE_009

Geometric discrepancy: 0.1081

The information below is about IL_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9H51|1|A|C|1500
9H51|1|A|A|1501
9H51|1|A|A|1502
9H51|1|A|G|1503
9H51|1|A|U|1504
*
9H51|1|A|A|1546
9H51|1|A|U|1547
9H51|1|A|A|1548
9H51|1|A|G|1549

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain c

Pseudouridylate synthase 1 homolog