IL_9H6Y_032

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_032 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.1202

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

14

Unit IDs

9H6Y|1|2|A|589
9H6Y|1|2|G|590
9H6Y|1|2|G|591
9H6Y|1|2|G|592
9H6Y|1|2|C|593
9H6Y|1|2|A|594
9H6Y|1|2|A|595
9H6Y|1|2|G|596
*
9H6Y|1|2|C|626
9H6Y|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS4

Chain i

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein