IL_9H74_032

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_032 not in the Motif Atlas

Homologous match to IL_9PN5_171

Geometric discrepancy: 0.1207

The information below is about IL_9PN5_171

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9H74|1|2|A|589
9H74|1|2|G|590
9H74|1|2|G|591
9H74|1|2|G|592
9H74|1|2|C|593
9H74|1|2|A|594
9H74|1|2|A|595
9H74|1|2|G|596
*
9H74|1|2|C|626
9H74|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

40S ribosomal protein S9

Chain i

40S ribosomal protein S30