3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
9HA6|1|A|A|1801, 9HA6|1|A|C|1816, 9HA6|1|A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_069 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.1666
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

9HA6|1|A|U|1798
9HA6|1|A|G|1799
9HA6|1|A|C|1800
9HA6|1|A|A|1801
9HA6|1|A|A|1802
9HA6|1|A|A|1803
9HA6|1|A|C|1804
*
9HA6|1|A|G|1813
9HA6|1|A|G|1814
9HA6|1|A|A|1815
9HA6|1|A|C|1816
9HA6|1|A|G|1817
9HA6|1|A|U|1818
9HA6|1|A|A|1819
9HA6|1|A|U|1820
9HA6|1|A|A|1821

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2

Coloring options:


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