IL_9HLZ_087

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAU*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HLZ_087 not in the Motif Atlas

Geometric match to IL_8P9A_394

Geometric discrepancy: 0.2221

The information below is about IL_8P9A_394

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9HLZ|1|AA|U|2960
9HLZ|1|AA|A|2961
9HLZ|1|AA|U|2962
*
9HLZ|1|AA|G|3050
9HLZ|1|AA|U|3051
9HLZ|1|AA|A|3052

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein bL17m

Chain MM

Large ribosomal subunit protein bL19m