IL_9HM0_004
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGGAG*UGAAAAU
- Length
- 13 nucleotides
- Bulged bases
- 9HM0|1|AA|A|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_004 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.3179
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_29495.1
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9HM0|1|AA|A|58
9HM0|1|AA|U|59
9HM0|1|AA|G|60
9HM0|1|AA|G|61
9HM0|1|AA|A|62
9HM0|1|AA|G|63
*
9HM0|1|AA|U|407
9HM0|1|AA|G|408
9HM0|1|AA|A|409
9HM0|1|AA|A|410
9HM0|1|AA|A|411
9HM0|1|AA|A|412
9HM0|1|AA|U|413
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain OO
- Large ribosomal subunit protein uL22m
- Chain PP
- Large ribosomal subunit protein uL23m
- Chain QQ
- Large ribosomal subunit protein uL24m
- Chain WW
- Large ribosomal subunit protein bL32m
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