IL_9HM0_028
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUAAA*UGAAU
- Length
- 10 nucleotides
- Bulged bases
- 9HM0|1|AA|A|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_028 not in the Motif Atlas
- Homologous match to IL_7A0S_033
- Geometric discrepancy: 0.2219
- The information below is about IL_7A0S_033
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
9HM0|1|AA|A|924
9HM0|1|AA|U|925
9HM0|1|AA|A|926
9HM0|1|AA|A|927
9HM0|1|AA|A|928
*
9HM0|1|AA|U|1173
9HM0|1|AA|G|1174
9HM0|1|AA|A|1175
9HM0|1|AA|A|1176
9HM0|1|AA|U|1177
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain 44
- Large ribosomal subunit protein mL43
- Chain NN
- Large ribosomal subunit protein bL21m
- Chain UU
- Large ribosomal subunit protein uL30m
- Chain aa
- Large ribosomal subunit protein mL58
- Chain cc
- Large ribosomal subunit protein mL60
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