IL_9HM0_087

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAU*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_087 not in the Motif Atlas

Geometric match to IL_8P9A_394

Geometric discrepancy: 0.2669

The information below is about IL_8P9A_394

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9HM0|1|AA|U|2960
9HM0|1|AA|A|2961
9HM0|1|AA|U|2962
*
9HM0|1|AA|G|3050
9HM0|1|AA|U|3051
9HM0|1|AA|A|3052

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein bL17m

Chain MM

Large ribosomal subunit protein bL19m