IL_9HM0_125
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_125 not in the Motif Atlas
- Geometric match to IL_8GLP_239
- Geometric discrepancy: 0.1898
- The information below is about IL_8GLP_239
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9HM0|1|r|G|739
9HM0|1|r|A|740
9HM0|1|r|A|741
9HM0|1|r|U|742
*
9HM0|1|r|A|779
9HM0|1|r|G|780
9HM0|1|r|A|781
9HM0|1|r|C|782
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2m
- Chain F
- Small ribosomal subunit protein bS6m
- Chain K
- Small ribosomal subunit protein uS11m
- Chain R
- Small ribosomal subunit protein bS18m
- Chain T
- Small ribosomal subunit protein bS21m
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