IL_9HM0_135

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM0_135 not in the Motif Atlas

Geometric match to IL_8P9A_394

Geometric discrepancy: 0.25

The information below is about IL_8P9A_394

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9HM0|1|r|A|1068
9HM0|1|r|U|1069
9HM0|1|r|A|1070
*
9HM0|1|r|U|1082
9HM0|1|r|A|1083
9HM0|1|r|U|1084

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 7

Small ribosomal subunit protein mS46

Chain X

Small ribosomal subunit protein mS33