IL_9HM0_144
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HM0_144 not in the Motif Atlas
- Geometric match to IL_8P9A_394
- Geometric discrepancy: 0.1449
- The information below is about IL_8P9A_394
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
9HM0|1|r|U|1298
9HM0|1|r|A|1299
9HM0|1|r|U|1300
*
9HM0|1|r|A|1309
9HM0|1|r|U|1310
9HM0|1|r|A|1311
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain S
- Small ribosomal subunit protein uS19m
- Chain W
- Small ribosomal subunit protein mS29
- Chain X
- Small ribosomal subunit protein mS33
- Chain Y
- Small ribosomal subunit protein mS35
Coloring options: