IL_9I5T_016
3D structure
- PDB id
- 9I5T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S subunit of P. gingivalis ribosome with Lefamulin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9I5T|1|A|G|836, 9I5T|1|A|G|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9I5T_016 not in the Motif Atlas
- Geometric match to IL_8B0X_080
- Geometric discrepancy: 0.0676
- The information below is about IL_8B0X_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I5T|1|A|G|709
9I5T|1|A|A|710
9I5T|1|A|A|711
9I5T|1|A|A|712
9I5T|1|A|C|713
*
9I5T|1|A|G|834
9I5T|1|A|A|835
9I5T|1|A|G|836
9I5T|1|A|A|837
9I5T|1|A|U|838
9I5T|1|A|A|839
9I5T|1|A|G|840
9I5T|1|A|C|841
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4
- Chain O
- Large ribosomal subunit protein uL15
Coloring options: